- PGx Primary Tools: Resources and topics related to pharmacogenomics and precision medicine. Examples: PharmGKB, CPIC.
- eQTL Databases: These resources archive or display results of several research projects on association between genetic variations and expression phenotypes. Examples: GTEx Portal, primary monocytes eQTL (IMMUNPOP) , BRAINEAC.
- Expression Databases: These databases archive or display results on mRNA or protein levels in cancer cell lines, normal or cancer tissues. Examples: GTEx Portal, Cancer Cell lInes Encyclopedia, cBioPortal.
- Genotype-Phenotype Databases: These databases archive or display correlative or association results between expression levels or genetic variants with phenotypes (e.g. drug toxicity, traits, disease, metabolites levels). Examples: GWAS Catalog, dbGAP Phenotype-Genotype Integrator, Gene ATLAS, Global Biobank Engine.
- Human Variations Databases: These databases archive or display results on genetic variations (germline or somatic) in different population cohorts. Examples: 1000 Genomes, Exome Variant Server, gnomAD Browser.
- Functional and Genomic Databases: These tools or resources are widely used to determine functional regions or elements in the human genome. Examples: CADD, HaploReg, ENCODE Project.
- Tools for Analysis: These tools are widely used for various analyses, including imputation, or visualization of genome sequence data and genetic association studies. Examples: LDlink, Michigan Imputation Server, Galaxy.
- Summary Statistics: These are summary statistics, which provide the association p-values from published genomewide associations studies. Examples: DIAGRAM, MAGIC, GIANT.